when i started playing around with turbos i wanted to know these very questions, lucky for me one of my oldmans mates is a mechanic and has been for about 30years so there not much he doesn't know, i just asked him. I'll try and pass on some of my knowledge to you.
A rule of thumb for naturally aspirated EFI manifolds is that long, narrow intake runners result in better low RPM tourque, while short, wide runners give top end horse power, and as A14force stated previously thats why manufacturers use multi-length runners in their performance cars.
However, there is some debate about how important it is to worry about intake runner length for turbo engines. Above the boost threshold, one argument goes,long narrow tubes simply add flow resistance and reduce VE (volumetric efficiency) of an engine. For ultimate horsepower production it is argued that short and wide is better, but of course this varies between person to person, depending on who you ask. In my opinion and expirence it doesn't matter all that much, if your going for a full blown turbo engine that is used for something like drag racing you can go with the short wide runners,but if its just to be used as a hot-steeter it doesn't matter all that much, Also seeing that the A-series isn't a cross flow head it all comes down to space, thats why it would be a good idea to have the intake run over the top of the head, this also makes it easier to hook it straight into the intercooler if needed.
As for the throttle bodies, i follow the KISS philosophy(Keep It Simple Stupid, one of my oldmans sayings!) just stick to the single TB, i have heard of people running TB's from XF falcon, Magna or camira TB's. Make it easier on yourself.
A14force- Ihave also heard about jaguar testing a VE of 100%+ i also know that NHRA pro-stock dragsters can achieve VE level as high as 115-125% within narrow rpm ranges at their tourque peak. Could you imagine an A-series acheiving a VE of !00% or greater??? my mind boggles at that thought!