Hi Meg,
welcome to the site, and may you find as much information and help as he have.
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1. What Gearbox will bolt straight up without making a bellhousing or addapter.
I know of a few gearboxes that bolt straight up, but we don;t seem to have them in South Africa. they are mainly out of the older RWD Corollas, and more information on them may be found here,
4A-GZE stuff.
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2.What needs to be done to the water outlet on the back of the head as it is to close to the fire wall.
Depending on what you want to do about the heater in the car, you may block it of, or manufacture a more compact 90 degree outlet to connect it up to your heater system. I have blocked it up as I wont be needing it.
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3.What struts will bolt straight on that has a disc brake.
Any late model 1400 Nissan ute's will bolt straight on, and their disks are quite good. Keep in mind that this is for us in ZA, but may be different for you if you're in another country.
Have a look at my build, as I've been doing the exact same conversion, and you may pick up a few things. I'll be bolting in my new front suspension in the next few days, and will have pictures up of that.